PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_3849 FitnessBrowser__Cola:Echvi_3849 (313 amino acids)

SeqID: Echvi_3849 FitnessBrowser__Cola:Echvi_3849
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 12230948: Ornithine carbamoyltransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_3849 FitnessBrowser__Cola:Echvi_3849
MKYYTQFENKSLADQLIQKALEYKKAPLSDNNLGRGKRIGLLFLNPSLRTRVSTQIAASN
LGMESIVLNMDKESWALEMEDGVIMNQGKAEHIRDAAGVLGSYFDILALRAFPSLTNKDE
DSEDFILHQFAKHSGLPLISLESAIRHPLQSLADMVTIQEHKQKEKPKVVLTWAPHIKAI
PHAVANSFAEWSIGCGHDVTITHPEGYELDERFTQGATIEHDQDKALANADFVYVKNWSA
FNEYGKILCTDESWMLNEQKLSQAPNAKVMHCLPVRRNVELSDEILDGPRSLVQHQAKNR
VFAAQAALSELLK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory