PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_3893 FitnessBrowser__Cola:Echvi_3893 (775 amino acids)

SeqID: Echvi_3893 FitnessBrowser__Cola:Echvi_3893
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_3893 FitnessBrowser__Cola:Echvi_3893
MLSNYPLSEVEECFLKESGVKEITTKIPYLTVDNFPKLGLLTACRFLEWAAHNPNGVISL
PTGKTPEFFIKWTQFLLENWDSKKGKQIREDYGMSDLKKPVLKDLHFVQIDEFYPISSSQ
HNSFYHYVNKFYIDGFGLDPKKALLINSDDIPLAEGKHFSEIFPDLKVDLSLRFREAANK
QEKLQQESIFLIDKWCGEYEQKIREKGGIGFFLGGIGPDGHIAFNTRGSDIFSTTRLTET
NFETQAVAAGDLGGIEVSANRLVITIGLDTIVYNPEAVGIIIAAGEAKAQIVKDSLETDL
TNIHPATVLQKLKNGRFYLTKGGASKLTDSINTYYKTGEWTQAKTEKSILELCKKLGKYA
SRLKLEDLKNDPYTSLIPDLSENTVASVIQSTIDKLNRGIEKEENEVLLHTGPHHDDISL
GILPHITNQLSEKTNEAHFSVLTSGFTAVTNTFVIDTLLHTKKLLDEDQIQMVNYEDFFQ
TGYKLKMDKDVYHYLTNVASEDPEQQKRGLCHRVVRAVVEVFGVKNNQKLRETINDVISI
LKNSYDGEKNPPKIQKLKGMIREFEEELVWAHFGVKVRNVHHLRLGFYTGDIFTEQPDKK
RDVEPIVEMFREINPTKISLTLDPEGSGPDTHYKVLQATAEAVRQWSKEKDLSDLRIIGY
RNVWFKFEAAESNVIVPVSLGDLSVMEDSFANCYLSQVNASFPSYAHNGKFSTIAKRTWV
NQLNDVQLLLGKDYFYQHDMAKVRASHGLIFFKDMNVEEFIAHARELEKSIEGMI