PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_4031 FitnessBrowser__Cola:Echvi_4031 (370 amino acids)

SeqID: Echvi_4031 FitnessBrowser__Cola:Echvi_4031
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596249: conserved hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    Extracellular          0.01
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_4031 FitnessBrowser__Cola:Echvi_4031
MNILIAPNAFKGTIPADRAAALIEEVLRQYLSHAEYQRCPIADGGDGTCFLLGNQLKLNK
IEAVGLNAIGLTEQGLIFLNESRKEAWIDVSTLSGLAGLPPFGVNAQLTSTFGTGQLIME
AIRRGAEHIILGLGGSATVDMGTGILRALGYLFLDKNGREIPMFSPGFLERIAHIQRPVA
MNKVRFTCLCDVKNTFFGSQGAIPVFGPQKGLSEADQHVFESAAKGVFELLKAKGDGQLT
DQPGFGAAGGIALGLSAFFSVKIEEGAHYFFEQVNMQEKVSWADWVITGEGKFDSQSAAG
KGSYKLLGLANKHQKKTLLITSGGEKDGKEAGFDDVVQLPKLNMDDLDFKQKAAENLKSS
LQFFLEKSNI

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory