PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_4038 FitnessBrowser__Cola:Echvi_4038 (955 amino acids)

SeqID: Echvi_4038 FitnessBrowser__Cola:Echvi_4038
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.00
    Cytoplasmic            2.00
    OuterMembrane          2.00
    Periplasmic            2.00
    Extracellular          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_4038 FitnessBrowser__Cola:Echvi_4038
MSLTKLIYTFVMLVLLYACAPSAGENFPPENGITITLPSDDPYSPKQVRLEVITENIIRV
TSSPLDTRPVNSSLMIIDQLPSPPAWEKTETADSVGLQTAKVQAWISKSTGEVTFKDASG
KLILQEAKAGKAFGPPADDLEDDAVFSIQQRFKSPENEAFYGLGQQQTGLFNYKGYHVDL
TQYNSVVAVPFMVSSRNYGILWDNYSITKFGDDREPMPLSELRLFDANGKEGFLTATYAN
DPNRPNEGLKEQEGHIAYTFLDDLNKIPKDFDMANGTATWQGSLQARESGVHRFHMTYSG
YVKVWADGQLLVDRWRESWNPGPLVFELPLDTEKATAFKIEWIPESTQSFLSVKFLPPDR
YRTTETYAFRSEAGKMLDYYFVAGQDMDELISGYRQLTGKAQIMPKWAMGFWQSRERYKT
QEELLSTVAEYRKRHIPLDNIVQDWSYWPEDAWGSHDFDPARFPDPVGMIDQVHDQYHAH
IMISVWPKFYEGIEHYKQFDEKGWLYKQNILNRQRDWIGEGYISTFYDAFNPGARELFWK
QINEKLYQKGIDAWWLDATEPDVLSNASIQHRKTLMNPTALGTATEYFNGYPLVNAKGIY
HGQRATNPDDRVFILTRSAFPGIQRYGAATWSGDISARFDELEQQIPAGLNFSLSGLPYW
TTDIGGFFVEDKYDRPDPKGEALEEWRELNTRWYQYGTFTPLYRSHGQYPYREVFNIAPE
GHPAYRSIVFYNKLRYRLMPYIYSLTGKVHHDDYTIMRPLIMDFDHDPRVGQIKDQFMFG
PSILVNPVYHYEATNRDIYFPKETGWYDLLTGEYQAGGVEKNIEAPYDKIPLFVKAGSII
PFGPKIEYTDEKPADEITLYVYAGQNGYFELYEDQGSNYEYEQGQFSIIPLTYDENTKTL
TIGAQEGEFEGMLTSRTFHVIYVQKDRPTGYKPDATTEKAIHYTGQSMALKLDEE