PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_4056 FitnessBrowser__Cola:Echvi_4056 (327 amino acids)

SeqID: Echvi_4056 FitnessBrowser__Cola:Echvi_4056
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 2498162: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            5.41
    Periplasmic            4.48
    CytoplasmicMembrane    0.06
    Extracellular          0.05
    OuterMembrane          0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_4056 FitnessBrowser__Cola:Echvi_4056
MSDRRKFLKNSLLSSTLLVPGAFRGAVDKWSGLKNGESHKPLILSTWNHGMPANDKAWEV
LEKSGNIVDAVEQGVMVTENDLKNLSVGLQGLPDREGIVTLDASIMKGDGSCGSVCFVRQ
VKHPISLARKVMEDTPHVMLAGEGARQFAIQEGFPIEKEELSPAAEKAYEKWKLKSEYKP
VINIENHDTIGMIGLDQNGNLAGSCTTSGLAYKMHGRVGDSPIIGAGLYVDNEVGAATAT
GLGESIIKICGSFLIVELMRQGRSPQEACEEAVRRLISKNKGIEGIQAGFLAVNKDGEHG
AYAVHPGFNYAMHHKEGKALVDSKSKF