PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_4177 FitnessBrowser__Cola:Echvi_4177 (327 amino acids)

SeqID: Echvi_4177 FitnessBrowser__Cola:Echvi_4177
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596936: probable oxidoreductase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_4177 FitnessBrowser__Cola:Echvi_4177
MEKRTLGNQGLKVSALGLGCMGLSFGYGPPTEKNAAIKLIRSAFEQGITFFDTAECYGPF
TNEELVGEAIAPFRKEVVIATKFGFKDGDSKKGLDSSPKRIREVAESSLRRLNTDHIDLF
YQHRVDPSVPMEDVAGTMSDLIKEGKIGHWGLSEAGATTIRKAHAIQPLAALQSEYSLFY
REPEKEIIPLLEEFGIGFVPFSPLGKGFLTGAISESTQFDPNDFRNTVPRFSKENRKANQ
ALVDLVKKIAVQKQATPGQIALGWLLAQKPFILPIPGTTKQHRLTENVGSTKINLSDDDL
FQVSTALKNIQLVGERYSAAAQKMIDR