PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_4343 FitnessBrowser__Cola:Echvi_4343 (309 amino acids)

SeqID: Echvi_4343 FitnessBrowser__Cola:Echvi_4343
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 29336998: N-acetylneuraminate lyase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_4343 FitnessBrowser__Cola:Echvi_4343
MKFKKIHGLIAATFTPFCEDGSLDERKIPVLAQSLRANGMAGAFIAGTTGEGAAMTYDEK
IRLLEAWAPFSAAEFKVMAMLGGTSQKEAIALADRANALGIYGIAMTAPYYMRPNSVKQL
VDYYESIAAAAPDQAFYFYHIPLLSKVELPMLDFLEEVGERIPNFAGIKYTHNDLMEFNR
CLRFQGGKYDILWGWDETMLAGLSMGAKGAVGSTYNYAGPLYQNLMEAFQQQDMEAARHW
QEKSIDLISLFGHYGGAACGKAIMKLCGLDCGQFRYPVKQLEKGDYEELKECLDQLGFFQ
YSSNEKQEQ