PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_4481 Echvi_4481 mercuric reductase (647 amino acids)

SeqID: Echvi_4481 Echvi_4481 mercuric reductase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 118671: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_4481 Echvi_4481 mercuric reductase
MVKIRNMFTPKSNKIGEGQKSLSEVVLEIEGMTCDHCATGIEKKVGHLVGTASQKVNYPE
GKGIFSYDPEKVSKKEIIDTINGMGNYSVKKELPASSNGQGTEEEVTFSISGMTCDHCAT
SIEKRFEGHEGLISKSVSYADEKGTFIFNPDKISRQEIIETINKEGNYKVQKEIGGNGNL
ERADPGQHDLIIIGGGSAAFSAATTANELGLTVLMVNAGLDIGGTCVNVGCVPSKHLIRA
AEQVHRAQHSPFNGVSGANPTFDFKATIQQKKELVAALQKKKYLGVVGDLDNITILEGWA
RFVDAHTIEVDGKPYKGMKYLLATGATTNVPDLPGLEDVGYLTNETLFDLEEQPEHLIVL
GAGYIALEIAQAYHRFGTKVTMLHRSERILRTQAADITDDLTSHFTEEGIEVHTNVSIQK
FEKNGDAIVAHTNEGTFEASHVLVATGTRPNTSGLAIENAGVNLNKTGHILVNTKQETNV
GHIYAAGDCTDTPAFVYTAAKEGKVAVLNAFQSTGDMVDYTGLPWVVFTDPQIAGAGLDE
KEAEEAGIPYETSVMPLTEVPRAQAALDTRGVIKLIRNSETDKLIGGRIIAPEGGELAMQ
VSLAIKAGMTIQELADAFHPYLTLSEGVKLAAITFNKDVSELSCCAS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory