PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1000 FitnessBrowser__WCS417:GFF1000 (428 amino acids)

SeqID: GFF1000 FitnessBrowser__WCS417:GFF1000
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [10 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 77416590: Serine transporter]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1000 FitnessBrowser__WCS417:GFF1000
MTDVRTPAAENPAATTTVTTGWTQYDTTWMLGLYGTAIGAGTLFLPINAGVGGFWPLIVL
ALLAFPMTFFAHRGLTRFVLSGKSGDITEVVEEHFGVGAGKLITLLYFFAIFPILLVYSV
ALTNTLGSFMEHQLHMTPPPRAILSLVLILGLMAIVRCGQGVIVKAMSVLVYPFVASLLL
LAFSLIPNWNGAFFASAGDGMPMPLFFKTLWLAIPVMVFSFNHSPIISAFAVDQKRVYGA
QAERKSSGILATAHGMMVLTVMFFCFSCVLALSPADLAAAKAQNISILSYLANHFQTPVI
AYAAPLIALVAITKSFLGHYIGASEGFQGLIVKSLRGRNRSMSAKWLERCTALFMVLTCW
AVATFNPSILRMIETMGGPIIACLLFLMPMYAIRRVPSLRKYSGQVSNVFVVVIGLIALS
AIVFSVLP