PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1003 FitnessBrowser__psRCH2:GFF1003 (574 amino acids)

SeqID: GFF1003 FitnessBrowser__psRCH2:GFF1003
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599890: acetolactate synthase large subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1003 FitnessBrowser__psRCH2:GFF1003
MELLSGAEMVVRSLRDEGVKYIYGYPGGAVLHIYDALFKEKAIEHILVRHEQAATHMADG
YARATGKAGVVLVTSGPGATNAITGIATAFMDSIPMVVISGQVPSTMVGTDAFQETDMIG
ISRPIVKHSFMIKHPSEIPEVMKKAFYLAESGRPGPVVIDIPKDMTNPAEKFEYVYPKKA
KLRSYSPAVRGHSGQIRKAAELLLGAKRPIIYAGGGVILGKASAQLTELAKMLNLPVTNT
LMGLGCYPGGDRQFVGMLGMHGSYTANLAMHHSDVILAVGARFDDRVINGASKFCPNAKI
IHIDIDPASISKTIKADIPIVGPVDSVLTEMVAIVKEIGQAPNAETVASWWKQIDEWRGN
GRLFPYNEGDGSIIKPQAAIEVLCEVTKGEAYVASDVGQHQMFACQYYKFDKPNRWLNSG
GLGTMGFGLPAAMGVKLNFPEADVAVVTGEGSIQMNIQELSTCLQYDLPVKIINLNNGAL
GMVRQWQDMVYNSRYSHSYMESLPDFVKLAEAYGHVGMRITDLKDLKPMMEEAFAMKDRL
VFLDIAVDTAEHVYPMQIKDGAMRDMWLSKTERT