PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1013 FitnessBrowser__Marino:GFF1013 (305 amino acids)

SeqID: GFF1013 FitnessBrowser__Marino:GFF1013
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 16080424: choline ABC transporter (choline-binding protein) [Bacillus subtilis subsp. subtilis str. 168]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.97
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1013 FitnessBrowser__Marino:GFF1013
MTPKSLLRRTAALIAFVMSGSVMAADPVVVSSKIDTEGSVLGQMVLQSLEGAGIPVENRL
QLGGTSIVRNAIKAGEIDIYPEYTGNAAFFHDQADLDIWKDADKAYQEAARLDKEAHNIV
WLEPAEANNTWAMSVRGDLARENNLATLEDLADYINEGGAFKFAASAEFVESASALPAFQ
EAYGFKLESDQLLILSGGNTAATLRAAALNNNDVNGAMTYGTDGGLDALDLKVMEDTAGV
QPVYQPAPIVRGEVLEAYPQIREVLTPIFESLDLETLQRLNGQVAVNGVPADTVARDYLD
SLAQD