PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1025 FitnessBrowser__Marino:GFF1025 (535 amino acids)

SeqID: GFF1025 FitnessBrowser__Marino:GFF1025
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598084: geranyl-CoA carboxylase, beta-subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1025 FitnessBrowser__Marino:GFF1025
MTILQSKINPRSEEFQANQESMAQAVADLRDKVSTIQQGGGPSYQERHIARGKLLPRERI
NRLLDDGSPFLEIGQFAAYNVYDEEVPAAGVIAGVGRVSGTECMIIANDATVKGGSYYPL
TVKKHLRAQEIALQNRLPCIYLVDSGGANLPRQDEVFPDREHFGRIFYNQARMSADDIPQ
IAVVMGLCTAGGAYVPAMADESIIVRNQGTIFLAGPPLVKAATGEVVTAEDLGGADVHCK
ISGVADHYAENDAHALEIARRSVSNLNRRKPTDVEIRKPKAPLYDAEEIYGIVGTDLRKQ
FDVRDVIARTVDGSEFDEFKRYYGQTLVTGFAHIHGYPVGIIANNGILFSEAAQKGAHFV
ELCCQRNIPLLFLQNITGFMVGQKYESEGIAKHGAKMVMAVACANVPKITVLIGGSFGAG
NYGMCGRAYSPDFLWMWPNARISVMGGEQAAGVMATVRREGMERKGQEWSAEEEAEFKKP
IIDTYEHQGHPYYASARLWDDGVIDPAQTREVVALSLSATLNRPAKPTRFGVFRM

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory