PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1026 FitnessBrowser__Phaeo:GFF1026 (432 amino acids)

SeqID: GFF1026 FitnessBrowser__Phaeo:GFF1026
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic, CytoplasmicMembrane[matched 2499313: NADH-quinone oxidoreductase subunit 1 (NADH dehydrogenase I chain 1) (NDH-1 subunit 1)]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.12
    CytoplasmicMembrane    0.88
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic (This protein may have multiple localization sites.) 9.12

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Predict transmembrane helices and signal peptides: Phobius

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Input

>GFF1026 FitnessBrowser__Phaeo:GFF1026
MLKDQDRIFTNLYGMHERTLAGAKQRGHWDGTAGIIEKGRDWIIQNMKDSGLRGRGGAGF
PTGLKWSFMPKESDGRPSYLVINADESEPGTCKDREIMRHDPHTLIEGALIASFAMNAHT
CYIYLRGEYIREREALQAAIDECYDQGLLGRNAAGSGWDFDVLLHHGAGAYICGEETALI
ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPDWFAGFGRQNNAGT
KLFAISGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLLAVIPGGSSVPCVRGEKMK
DAIMDFDYLRGELGSGLGTAAVIVMDKNTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM
MRVMDRLVKGEAELEEIDMLWDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRIKA
QKSGRMGAMAAE