PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1038 FitnessBrowser__Marino:GFF1038 (566 amino acids)

SeqID: GFF1038 FitnessBrowser__Marino:GFF1038
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599890: acetolactate synthase large subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1038 FitnessBrowser__Marino:GFF1038
MNGAQHILEAFHRHNISTVFGYPGGCIMPLYDALVDDVGVEHVLCRHEQGCALAADGYAR
ASGKLGVCIATSGPGATNLITGVANAHRDSIPMLVITGQVPSGLIGTDAFQETDVLGMTL
GIVKHSYLINDADSLPIIMEEAIELAQSGRPGPVWIDIPKDLLLSDVADAPFPQAQPYEP
ASPDLKEALAMLRAARKPLLYSGGGISLGHAEENFRAFAESSALPAVVTLKGIGNPGKHN
PYNLGMLGMHGSRAANKAVDECDLLLVIGARLDDRATGKLDGFAPNARMIHIDADAAEIN
KLRDADLAIRGDLNHILKSLAGELHADPLAISEWQKQCRSWYTTGGFHAADNEEPLAPIT
GPAFIRQLSRIAPDDTVIACDVGQHQMWVAQHYDFDHPRHHLTSGGLGTMGFGLPAAIGA
QFADRNSTVINVTGDGSFMMNAQELATIRRYNLPVKLIVMDNQCLGMVRQQQELFYNNRE
SQINLDDNPDFVAMARAFDIPALYIERTDQIRRGIETILAYNGPMLLHVAISREENVWPI
VKPGASNTDMIDETARTAKTSKEQVA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory