PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1044 FitnessBrowser__Marino:GFF1044 (498 amino acids)

SeqID: GFF1044 FitnessBrowser__Marino:GFF1044
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599679: |Glu-tRNA(Gln) amidotransferase subunit A|5013974 - 5015428]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1044 FitnessBrowser__Marino:GFF1044
MSAPQSCHSFRNDAIGCDDATALAERVRRREISVTELTQTAIARAQAVEPLLHGLASANY
DQAIRTASKLDAADQTGSFPLFRGVPTLIKDNTNVSGMTTRHGSLAVPSVPASDTSPFAR
QLLAQGFLCLGKSTLPEFGFNATTEPAHAPATCNPWNLAYSSGASSGGSAALVAAGVVPI
AHANDGGGSIRIPAACCGLVGLKPTRGRLIDNEAAASLPINIISEGVVTRSVRDTANFFE
QAETYFRNPGLPAIGKMEGPSGRPLRIGLVLDSINGHKTDDITRRTVEETALRLEKMGHR
IEPVPVPVHSTFPDDFALYWALLAFGIRANGRKLLHPAFDKHKTDGLTNGLDRMFRRQFW
RLPTALWRLKRSWHDYAHAMAGFDAVLTPVLGHTTPALGHLSPAVPFDTLFERLREYVSF
TPLANATGAPAISLPMGHTPDQLPVSVQFMGRHGGERTLLDIAFTLEANHPWPLLCDFNR
NNLGSREQNTRDSLANPV