PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1045 PS417_05300 glucose dehydrogenase (805 amino acids)

SeqID: GFF1045 PS417_05300 glucose dehydrogenase
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [6 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 118555: Alcohol dehydrogenase [acceptor] precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.34
    CytoplasmicMembrane    0.66
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.34

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1045 PS417_05300 glucose dehydrogenase
MSTDGASSPSRLLPRLLGVLLLIMGLALLAGGIKLTMLGGSLYYLLAGIGITLTGVLLLA
TRRAALGLYALVLFASTVWALWEVGLDWWQLVPRLALLFALGIVMLLPWFRRPLLRGQPA
PLGTGALSVAVVLAGATALASQFTNPGEMVKTGQLDRDAVPGMASAAPSQAEGDWNSYGR
SAYGDRYSPLAQITPENAHKLVPAWTYRTGDIPGPNDPGETTAENTPLKVNGMLYVCTPH
SQVIALDPDTGKEIWRFDPKISSMGAENFKGWAHMTCRGVSYHDDAAYASEQSPTGSASP
SAAPNACPKRIFVPTADTRLIALNADTGKMCEDFGDKGQVDLRANIGGFAPGGYYSTSPP
AVTKNLVVIGGHVTDNVSTDEPSGVIRAFDVHTGKLVWNWDSGNPDDTTPLAEGKTYTRN
SPNMWSMFAVDEKLGMLYLPMGNQMPDQYGGDRTDDSEKYAAGLTALDIDTGHVKWTFQF
THHDLWDMDVGGQPSLIDIKTEAGVKQAVMASTKQGSIYVLDRATGQPVVPIHEVAVPQG
AVAGDRTSPTQPKSDLNFMPPPLKERDMWGVTPFDQLLCRIDFKSMRYDGAFTPPSLQGS
IVYPGNFGVFDWGGISVDPVRQIAFVNPSYMAFKSKLIPAADIAKQGPRVSETEGVQPNK
GAPYGVILEAMLSPMGLPCQAPAWGYVAAVDLTTHKTIWMHKNGTVRDSAPVPIPLTMGV
PSLGGTFTTAGGVAFLSGTLDQYLRAYDVKNGKQLWEGRLPAGAQTTPMTYTGKDGKQYV
LVMAGGHGSLGTKQGDYVMAFKLPE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory