PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1049 FitnessBrowser__psRCH2:GFF1049 (265 amino acids)

SeqID: GFF1049 FitnessBrowser__psRCH2:GFF1049
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598787: probable enoyl-CoA hydratase/isomerase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1049 FitnessBrowser__psRCH2:GFF1049
MTDFQTIELNKDARGVATLWLNRADKNNAFDARVIGELNAALAQVQDDASIHFLILRGRG
KHFSAGADLGWMRESAKLDYQANLADAHKLGELMQRLYQLPQPTLAVVQGAAFGGALGLI
ACCDMAIGASDALFCLSEVRIGLAPAVISPYVVKAIGERATRRYALTAERFDGKRARELG
LLAETYPASELDAALEQWVDNLLLNSPQALKACKALLLEVGDGDFSADLRQTTEQAIARL
RTSPEGQEGLSAFLEKRTPAWQERA