PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1137 FitnessBrowser__Phaeo:GFF1137 (452 amino acids)

SeqID: GFF1137 FitnessBrowser__Phaeo:GFF1137
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595493: probable glutamine synthetase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1137 FitnessBrowser__Phaeo:GFF1137
MSAWLDTLPEAAKTYLEGRRLDEVECIISDLPGIARGKAVPASKFAKQDYFHLPDSIFYQ
TITGDWAEAADDDGWIEKDMILKPDMSTATAAPWTGDWTLQVIHDAYDRDHKPIPFSPRN
VLKRVVQLYHDKGWQPVVAPEMEFFLVARNIDPAREIEPMMGRSGRPAAARQAYSMTAVD
EFGPVIDDIYDFAEAQGFEIDGITQEGGAGQLEINLRHGDPVKLADEVFYFKRLIREAAL
RHDCFATFMAKPIADEPGSAMHIHHSIIDMESGDNIFSGPQGGETDAFYHFIGGLQNHLP
AGLAVMAPYVNSYRRYVKEQAAPINLEWARDNRTTGIRVPLSGPEARRVENRIAGMDCNP
YLGIALSLACGYLGLVNEERPRKQFKGDAYAGDGDIPQVMGQALDLFEEASALHEVLGPE
FARVYSIVKRAEYDEFLQVISPWEREHLLLNV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory