PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1150 FitnessBrowser__Phaeo:GFF1150 (383 amino acids)

SeqID: GFF1150 FitnessBrowser__Phaeo:GFF1150
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599715: ornithine decarboxylase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1150 FitnessBrowser__Phaeo:GFF1150
MQQIPPLWLSPETHLARSTPDHPILYFSPRVLHEVANRFQHGFPGLVTYAVKANPHPAVL
SNLVAAGITGFDVASPAEMDAVRAASPDAVMHYNNPVRSDVEIAAGIAHGVASWSVDEPS
ELDKLADVPKSCEIAVRFALPVAGAAYDFGSKFGAEPDMAIELLKRVAAEGWTPALCFHP
GTQCEDESAWVEYVHAAKRIIDAAGVKIARLNVGGGFAANRDGVAPDLEKVFAAIWVAVD
AAFGDDKPGLICEPGRAMVSESFTLAARIKGIRKAGEVVFLNDGVYGGLVDIRDMGLPGR
VEVVAADGTRRGADAQPRVVFGPTCDSLDRLPDGLPLPRDTQIGDYVLFPGLGAYSSAMS
TQFNGYGLSDVATVIELSGQARP

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory