PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1165 FitnessBrowser__WCS417:GFF1165 (474 amino acids)

SeqID: GFF1165 FitnessBrowser__WCS417:GFF1165
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595944: probable aldehyde dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1165 FitnessBrowser__WCS417:GFF1165
MQTKLLINGQLVEGEGPAQAVFNPALGRVLVEINEASEAQVDAAVRAADAAFESWSQTAP
KDRSLLLLKLADVIEAHGEELAQLESDNCGKPYSAALNDEIPAIADVFRFFAGASRCMSG
SAGGEYLPGHTSMIRRDPVGVIASIAPWNYPLMMVAWKIAPALAAGNTVVLKPSEQTPLT
ALRMVELAADLFPAGVLNLVFGRGPTVGSPLVNHPKVRMVSLTGSIATGANIISSTADSV
KRMHMELGGKAPVIIFSDADIDAAVEGIRTFGFYNAGQDCTAACRIYAQAEIYEQFVEKL
GAAVASIKYGLQDDPATELGPLITAQHRDRVAGFVERAVAQSHIRLVTGGKAVEGNGFFF
EPTVLADAQQDDEIVRREVFGPVVSVTRFTDEAQVLGWANDSDYGLASSVWTADVGRAHR
LAARLQYGCTWVNTHFMLVSEMPHGGQKLSGYGKDMSMYGLEDYTSVRHVMFKH