PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1178 FitnessBrowser__psRCH2:GFF1178 (482 amino acids)

SeqID: GFF1178 FitnessBrowser__psRCH2:GFF1178
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597078: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1178 FitnessBrowser__psRCH2:GFF1178
MIQFLLNRELRSERALDPNTTVLQYLREHRGKTGTKEGCASGDCGACTVVVGELVDDRLR
YRTLNSCLTFVSALHGKQLISVEDLKDQGRLHSVQQAMVDCHGSQCGFCTPGFVMSLFAL
QKNAGAVNEYDPHQTHEALAGNLCRCTGYRPILEAAEQACCGKQPDQFDAREAETIAQLK
AIEPRETAELNSGDKRCLSPLTVDDLADIYSANPDARLLAGGTDLALDVTQFHRELPVMI
YVGHIAEMKKVEITDSSIEIGAAAPLTDCYAALAAEYPDFGELLQRFASLQIRNQGTLGG
NIGNASPIGDSPPLLIALGAEVVLRHGASSRALPLEDYFIDYKVTARQPGEFIEKIIVPR
ATSDRLFRAYKVSKRLDDDISAVCAAFDLQITDGVVADARVAFGGMAAIPKRAAACEATL
NGAPWNQQTVEAACEALAEDFTPLTDFRASREYRLLVAQNLLRKCFLEQHAPKTETRVTA
YV