PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1243 FitnessBrowser__psRCH2:GFF1243 (351 amino acids)

SeqID: GFF1243 FitnessBrowser__psRCH2:GFF1243
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 135560: L-threonine 3-dehydrogenase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1243 FitnessBrowser__psRCH2:GFF1243
MSNSIGYAALDPSTPLAPYSFSRREVGPNDVRIEILFCGVCHSDLHTARNEWNNTLYPSV
PGHEIVGRVSAVGANVSKFKAGDIAGVGCLVDSCRTCSSCGEGLEQYCENGFVGTYNGPA
FGGGENTLGGYSDNIVVDEKYVLRINHTDNLAAVAPLLCAGITTYSPLRQWKVGPGQKVG
VVGLGGLGHMAVKIANAMGAKVVLFTTSPDKREDALRLGAAEVVVSKNKDEMAAHANSFD
FILNTVAAPHNLDAFVNLLKRDATMTLVGAPASPHPSPSVFGLIFKRRRIAGSLIGGIAE
TQEMLDFCAEHGIVSDIEMIRMQDINDAYERMLKSDVKYRFVIDMATLKSA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory