PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1247 FitnessBrowser__WCS417:GFF1247 (281 amino acids)

SeqID: GFF1247 FitnessBrowser__WCS417:GFF1247
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.00
    Cytoplasmic            2.00
    OuterMembrane          2.00
    Periplasmic            2.00
    Extracellular          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1247 FitnessBrowser__WCS417:GFF1247
MSLENLSCQKSFGGWHKRYKHHSDVLGCDMTFAVYLPPQAEQGSKLPVLYWLSGLTCTDE
NFMQKAGAQRMAAELGLIIVAPDTSPRGPGVPGDPDNAWDFGLGAGFYLNATQEPWAKHY
RMHDYVVQELPALVEAHFPASDKRGISGHSMGGHGALVCALRNPGRYLSVSAFSPINNPM
DCPWGQKAFSRYLGEERSKWREWDACVLISEASEKLPLLVDQGDRDDFLAVQLKPEALQQ
AAKAANHPLELRLQPGYDHSYFFIASFIEDHLRHHGRALLG