PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1262 FitnessBrowser__WCS417:GFF1262 (242 amino acids)

SeqID: GFF1262 FitnessBrowser__WCS417:GFF1262
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [4 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 123175: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1262 FitnessBrowser__WCS417:GFF1262
MFEELLQTLGLSALSLKGFGPLLLQGTWMTIKLSVLSLAVSVLLGLLGASAKLSSLPFLR
IPAQLYTTLIRGVPDLVLMLLIFYSLQTWLTGLTDFMEWEYIEIDPFSAGVITLGFIYGA
YFTETFRGAILAVPRGQLEAATAYGLKRGQRFRYVTFPQMMRFALPGIGNNWMVMLKATA
LVSIIGLADLVKAAQDAGKSTYQLFYFLVLAALIYLLITSASNFVLRRLERRYSAGAREA
VR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory