PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1376 FitnessBrowser__Marino:GFF1376 (290 amino acids)

SeqID: GFF1376 FitnessBrowser__Marino:GFF1376
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598765: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1376 FitnessBrowser__Marino:GFF1376
MTQTLAFIGLGIMGSRMAANLLDKGDVNLIVFNRSTEAEKSLKDKGAKVADSAADAVRQA
DVVFSMLASPPVVQDMALGEDGFVSAMAENALWVDCSTVNPSFTEYAGEVARAQGIRFMD
APVAGTREPAASGELTFLVGADDEDFQSVEPLLQTMGKKIVHVGQVGRGTAFKMLVNAML
AQSMLAFAETTLLGEKLGFSRDFLMDTLPNLPVTPPFIGGKAELIRNGDFDAQFPLELMH
KDLHLLEQTAYEVGQPLYLANLAKEVYGSASSSGWGRKDFASVFEFLNRH