Running PSORTb v3.0 on GFF138 FitnessBrowser__psRCH2:GFF138 (251 amino acids)
SeqID: GFF138 FitnessBrowser__psRCH2:GFF138 Analysis Report: CMSVM- Unknown [No details] CytoSVM- Cytoplasmic [No details] ECSVM- Unknown [No details] ModHMM- Unknown [No internal helices found] Motif- Unknown [No motifs found] OMPMotif- Unknown [No motifs found] OMSVM- Unknown [No details] PPSVM- Unknown [No details] Profile- Unknown [No matches to profiles found] SCL-BLAST- Periplasmic [matched 15599060: probable amino acid binding protein[Pseudomonas aeruginosa PAO1]] SCL-BLASTe- Unknown [No matches against database] Signal- Non-Cytoplasmic [Signal peptide detected] Localization Scores: Periplasmic 9.76 CytoplasmicMembrane 0.12 Extracellular 0.11 OuterMembrane 0.00 Cytoplasmic 0.00 Final Prediction: Periplasmic 9.76 -------------------------------------------------------------------------------
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Predict transmembrane helices and signal peptides: Phobius
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>GFF138 FitnessBrowser__psRCH2:GFF138 MKSYKKILLTAAASLIIGTQAFAAEKLRIGTEGAYPPFNLIDASGKVVGFDLDISHALCA KMKVECEVVTSDWDGIIPALNAGKFDFLAASMSVTEERKNAVDFTDHYYTNKLQFVAPKN VEFQTDEGYLKGKVIGAQRATIAGTWLEDNLDRVVDIKLYDTQENAYLDLASGRVDGILA DTFVQWEWLKSDAGKNFEFKGEPVFDDDKIAIAVRKGNDELRERLNKALAEIIADGTYKQ INDKYFPFSIY
Lawrence Berkeley National Laboratory