PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1393 FitnessBrowser__psRCH2:GFF1393 (525 amino acids)

SeqID: GFF1393 FitnessBrowser__psRCH2:GFF1393
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.00
    Cytoplasmic            2.00
    OuterMembrane          2.00
    Periplasmic            2.00
    Extracellular          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1393 FitnessBrowser__psRCH2:GFF1393
MATFAQDDDGVVVIIGSGAGGGTLANALAKQKIRSVVLEAGKRHTLEDIENDEWAMFKKI
SWLDKRQAAGGWHLTENNPTLPAWIVKGVGGSTVHWAGIALRFRDFEFKMQSINGDIAGA
NLLDWPVTLEEMAPWYEKAEKHMGVTGPSTGMDYHPWHNSFKVLATGAKRVGYKEILSGP
MAINTEPYDDRAACQQLGFCMQGCKMGAKWSTLYTDIPRAEASGYCEVRPQSMVLRIEHD
AKGRANAVVYADASGTIQRQKARVVCVAGNSIESPRLLLNSASAMFPDGLANSSGQVGRN
YMTHTTAGIFAVMPKPVNMHRGTTCAGVISDESYNDPSRGFVGGYRLEILALGLPFLSAF
LDPTPKGWGKQFTSRMEKYNHMSGVWLCGEDLPLESNRITLHDSEKDQYGLPIPVVTKSD
HPMDAAMRKHGVAATARCYEAAGATDIIELPPYPASHNMGTNRMSAMARDGVVNKWGQSH
DIPNLFVSDGSQFTTSGGQNPTLTIVALALRQAEQIGRLLNERAI