PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1415 FitnessBrowser__psRCH2:GFF1415 (769 amino acids)

SeqID: GFF1415 FitnessBrowser__psRCH2:GFF1415
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1415 FitnessBrowser__psRCH2:GFF1415
MAVAHNLGFPRIGADRELKKALEAYWKGELDELGLRQVGRQLRAQHWQAQADAGIQLLPV
GDFAWYDQVLTHSLMFGVVPQRFRPADGQPTLDTVFAMARGVTSSCCGGGQAQEMTKWFD
TNYHYLVPEFTVDQQFQLSWSQLFEEVEEAQALGHAIKPVLVGPLTYLWLGKLKGEDTEG
FDKLELLERLLPVYGEVLDRLAAQGIEWVQIDEPILALDLPQDWKNAFERAYNLLQRAPL
KKLVATYFGGLEDNLSLAAALPVDGLHIDLVRAPEQYPLILDWLPTYKVLSLGLVNGRNV
WRCDLDKALEVARHAAERLGDRLWLAPSCSLLHSPVDLEREDRLDHELKGWLAFAVQKCA
EVATLARAINEPTNEDVVVELARSRAVQAARQHSPRIHKPQVQTRLSAIQPQDSQRTSVF
AARIEQQRARLDLPAFPTTTIGSFPQTPAIRLARQAYKQGRLSLGDYTEAMQAEIRHAVA
VQEQIGLDVLVHGEAERNDMVEYFAEQLDGYAFTRFGWVQSYGSRCVKPAVIYGDLSRPQ
PMTVDWIRYAQQQTDRVMKGMLTGPVTMLMWSFAREDVSREVQARQLALAIRDEVCDLEA
AGIRIIQIDEAAFREGLPLRRAQWQHYLDWAVEAFRLCASGVRDETQIHTHMCYSEFNDV
IESIAAMDADVITIETSRSQMELLEAFRAFDYPNDIGPGVYDIHSPRVPDTAEMVQLLEK
AAERIPAERLWVNPDCGLKTRAWPETEAALVNMVAAARQLRALRNAKVA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory