PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1428 FitnessBrowser__psRCH2:GFF1428 (344 amino acids)

SeqID: GFF1428 FitnessBrowser__psRCH2:GFF1428
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.00
    Cytoplasmic            2.00
    OuterMembrane          2.00
    Periplasmic            2.00
    Extracellular          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1428 FitnessBrowser__psRCH2:GFF1428
MSATLFSLAFGVGTQNRQGDWLEVFYAQPLLKPAGELVAAVAPLLGYAGGNQAITITTSQ
AAQLADALKPLDATQYALLTRLAESQRPLVATLLAEDAPLSSTPEAYLKLHLLSHRLAKP
HGLNLTGIFPLLPNVAWTNQGAVDLGELAERQLEARLKGDLLEVFSVDKFPKMTDYVVPA
GVRIADTARVRLGAYVGEGTTVMHEGFINFNAGTQGPGMIEGRVSAGVFVGKGSDLGGGC
STMGTLSGGGNIVISVGEGCLIGANAGIGIPLGDRNTVESGLYITAGTKVSLLDENDQLV
KVVKARELAGQSDLLFRRNSQTGAVECKTHKSAIELNEALHAHN