PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1448 FitnessBrowser__WCS417:GFF1448 (456 amino acids)

SeqID: GFF1448 FitnessBrowser__WCS417:GFF1448
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595493: probable glutamine synthetase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1448 FitnessBrowser__WCS417:GFF1448
MSVFACLHEAQSFLEQNPDIEMFELFILDNNGVPRGKLLHRDELLAVYESGRPLPSTILG
LTINGDDVENSGLVWEVGDIDCRAYPISGSLQRMPWRLIPTAAVQVSMHLTEGLPATVAD
PRHLLAKVIDALKADGYYPVMAAELEFYLLDQKPDSNGRPQPARDVDGGRPRSTQVYGLR
ELEQIEPFLADLYSACKLQGIPARTAISEYAPGQVEITLEHRSDALQAMDEAVRYKRLVK
GVAHQHGMTACFMAKPFDDLAGTGMHMHVSLADAQGNNLFASEATDGTPLLRQAVGGMLS
TLLDSLLMFCPNANSYRRFQTNSYAPLAATWGVDNRTVSLRVPGGPANSRHIEHRICGAD
ANPYLAAAAILAGIHRGIREQRDPGAPVEGNGYAQATALLPTDWLTTLRALEGSSWAREA
FGTEFLDVYLAVKRAEYRQFMGEVGAQDWRWYLHQA