PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF148 FitnessBrowser__psRCH2:GFF148 (260 amino acids)

SeqID: GFF148 FitnessBrowser__psRCH2:GFF148
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 130990: Glycine betaine/L-proline transport ATP-binding protein proV]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF148 FitnessBrowser__psRCH2:GFF148
MSYLSIEHLDKSFVRGNLASQVLKDINLNIAKGEFISIIGHSGCGKSTVLNIVAGLLDPS
LGGVILDGKEVRGPGPDRSMVFQNHSLLPWLTVYENVEVAVNKLFKRSMNKRERREWIEH
NLALVNMGHALNKYPQEISGGMKQRVGIARALAMKPKVLLLDEPFGALDALTRAHLQDEV
MKIQKDLGNTMMMITHDVDEAVLLSDRIVMMTNGPSATIGEILEVKLPRPRDRIALADDP
EYNHYRRAVLSFLHERHRLH

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory