PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1551 HP15_1513 acetyl-CoA acetyltransferase (374 amino acids)

SeqID: GFF1551 HP15_1513 acetyl-CoA acetyltransferase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598209: fatty-acid oxidation complex beta-subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1551 HP15_1513 acetyl-CoA acetyltransferase
MGRAKNGCFRNVRAETLSANLIEALFERNPKLDPKEVEDVIWGCVNQTKEQGFNVARQIS
LLTRIPHESAAQTVNRLCGSAMSAIHTAAQAIMTGNGDVFFVGGVEHMGHVPMTEGFDHN
PAASKYSAKASNMMGLTAEMLAKMHGITREQQDEFGARSHRLAHEATLEGRFKNEIVPIE
GHDENGFKVLIEEDETIRPETTAESLSQLKPAFDPKNGTVTAGTSSQLTDGAAAMVLMSA
ERAEALGLKPIAKIRSMAVAGCDPAIMGYGPVPATKKALKRAGLKVEDIDFWELNEAFAG
QSLPVLKDLKLLGVMEEKVNLNGGAIALGHPLGCSGARISTTLLNVMQAKGGKLGVSTMC
IGLGQGIATVWERL