PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1651 FitnessBrowser__psRCH2:GFF1651 (247 amino acids)

SeqID: GFF1651 FitnessBrowser__psRCH2:GFF1651
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 130017: Acetoacetyl-CoA reductase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1651 FitnessBrowser__psRCH2:GFF1651
MNLQGKVALVTGASRGIGQAIALELGRQGAIVIGTATTSSGAERIAETLKENGIEGAGLV
LDVGNDESVSSTLEHIQQHLGQPAILVNNAGITRDNLMLRMKDDEWHDVINTNLSSLYRL
SKAVLRGMTKARWGRIINIGSVVGAMGNAGQVNYAAAKAGLEGFSRALAREVGSRGITVN
SVAPGFIDTDMTRELPEAQRDALLGQIPLGRLGQAEEIAKVVAFLASDGAAYVTGATVPV
NGGMYMS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory