PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1667 FitnessBrowser__psRCH2:GFF1667 (249 amino acids)

SeqID: GFF1667 FitnessBrowser__psRCH2:GFF1667
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.00
    Cytoplasmic            2.00
    OuterMembrane          2.00
    Periplasmic            2.00
    Extracellular          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1667 FitnessBrowser__psRCH2:GFF1667
MKVLVAVKRVVDYNVKVRVKADNSGVDLANVKMSMNPFCEIAVEEAVRLKEKGVASEIVV
VSIGPTAAQEQLRTALALGADRAVLVESNDELNSLAVAKLLKAVVDKEQPQLVILGKQAI
DSDNNQTGQMLGALTGYAQGTFASKVEVAGDKVNVTREIDGGLQTVALSLPAIVTTDLRL
NEPRYASLPNIMKAKKKPLEVLTPDALGVATNSTVKTLKVEAPASRSAGIKVKSVAELVE
KLKNEAKVI