PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1685 FitnessBrowser__Phaeo:GFF1685 (1139 amino acids)

SeqID: GFF1685 FitnessBrowser__Phaeo:GFF1685
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1685 FitnessBrowser__Phaeo:GFF1685
MSTQKISLNDKFDLTKSQVMLNGTQALVRLMLMQKHRDKAAGLNTAGLVTGYRGSPLGAV
DMQMKRAEKHLTASDVTFQFGLNEDLAVTALWGAQQAEVRGEGKYDGVFGLWYGKGPGVD
RSGDAIRHANMAGSSKHGGVLVAMGDDHTGESSTVLHQSEWSLMDCYLPIVSPAGVQEIL
DYGAYGLALSRFSGLWVGLKTMKDTIEVTSVVDGDPDRMKLVTPEFDMPADGLNIRLDDD
RFRQENRIIDYKRFAAEAFSHANKMDKRMWGKPGAKIGFVAAGKNWLDLVHAMSLLNIDE
TMAERLGITTYKVGQTWPLDMKGFNDWAEGLDLIVVVEEKRKLIEIQIKEAIFDDRQGRR
VYGWYKGGAGAMHREELFPTKYALDPIMIAEKLGQILIEEGRETEAIRAGLTALDDAKRA
DNAEEIAARLPYFCSGCPHNSSTKLPDGSRAYAGIGCHFMVQWMDRETTGFTHMGGEGVN
WVGEAPFSNRKHVFQNLGDGTYNHSGVQAIRAALAEGTNITFKILYNDAVAMTGGQEAEG
GLTAHQIAHELTAMGMKTIAVVYDEKEDVDAKLFPAGMRMHERAELMAVQKEMETVEGVS
AIIYIQTCAAEKRRRRKKGLFPDPDQRVFINSDVCEGCGDCGVQSNCVSIVPKETELGRK
RAIDQSSCNKDFSCVKGFCPSFLTIEGAKIRKEPTAALDLPDLPKPELPSINGTHNVVIT
GVGGTGVVTIGAVLAQAAQIDGKGAGMMEMAGLAQKGGAVHIHCRIANKPEDISAIRVAT
GEAHALIGGDLVVSAGAKTIGLMKTGKTGAVVNSHEIITGDFTRDTDFQLPTDRLQVALE
ARLRDRLDLFDASDLARASMGDSIFSNMMIFGAAWQRGLLPISLEAIQEAITLNGAAVER
NLRAFDIGRWAVLYPQEVQKLIAPNVVELPKSLEEQIAFRSAQLVDYQGPRLAKRYGKML
DGIADKALKESVAKGYHKLLSYKDEYEVARLLLSSREKAEAEFEGDLKISYNLAPPMLTG
KDPDGRPKKRKFGPGLERGLRLLAKFKGLRGTPLDVFGYTAERKMERALIAQYEADMKEW
LPKASPEIMAPLIALAELPLEIRGFGPVKQANESKAAKRREELLAALRHGGTELKTAAE