PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1729 FitnessBrowser__WCS417:GFF1729 (426 amino acids)

SeqID: GFF1729 FitnessBrowser__WCS417:GFF1729
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596696: conserved hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    Extracellular          0.01
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1729 FitnessBrowser__WCS417:GFF1729
MSVDPQHLLRELFATAIDAAHPRQVLEPYLPADRSGRVIVIGAGKAAAAMALVVENVWQG
EVTGLVVTRYGHGAPCQKIEVVEAAHPVPDAAGLAVAQRVLALISNLTEHDRVIFLLSGG
GSALLALPAEGITLADKQAINKALLKSGATIGEMNCVRKHLSAIKGGRLAKAAWPATVYT
YAISDVPGDQATVIASGPTVGDPSTSQQALAILKRYNIDAPASVRSWLQNPASETVKPGD
PVLARSHFQLIARPQQSLEAVAVKVRQAGFSPLILGDLEGEARDVAKVHAGIARQIVQHG
QPLAAPCVILSGGETTVTVRGNGRGGRNAEFLLSLTDSLKGLPGVYALAGDTDGIDGSED
NAGAIMTPCSYSRAEALGLSASDELDNNNGYGYFAALDGLIITEPTRTNVNDFRAILILE
TAKHDA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory