PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1729 PGA1_c17530 phosphoglycerate kinase Pgk (396 amino acids)

SeqID: GFF1729 PGA1_c17530 phosphoglycerate kinase Pgk
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 129931: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1729 PGA1_c17530 phosphoglycerate kinase Pgk
MGWNALDTMDLAGKRVLVRVDINVPVEDGRVTDDTRIQRVAPTIKDILAAGGTPILLAHF
GRPKGKVVAEMSLRPLVPALEAAFGAPVTFAADCRGPAAEAAVQGLPAGGVLLLENTRFH
AGEEKNDTDLAAEMAKLGDIYCNDAFSAAHRAHASTEALARLLPACAGRLMQAELTALET
ALGQPQRPVTAVVGGAKVSTKLELLGNLVGKVDNLVIGGGMANTFLAAQGIDVGKSLCEH
DMADTAREILSKAEDQGCKIILPVDVVVAREFKAGADNETVAADACPADAMILDAGPQTV
AAVADTLSTSKTLIWNGPMGAFEIAPFDAATNAAAQQAASLTKSGALVSVAGGGDTVAAL
NQAGAAADFTYISTAGGAFLEWMEGKTLPGVAALEG