PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF18 Psest_0018 ectoine/hydroxyectoine ABC transporter, permease protein EhuC (219 amino acids)

SeqID: GFF18 Psest_0018 ectoine/hydroxyectoine ABC transporter, permease protein EhuC
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [4 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 84027924: Inner membrane amino-acid ABC transporter permease protein yecS]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF18 Psest_0018 ectoine/hydroxyectoine ABC transporter, permease protein EhuC
MIELLPLLLQGAWVTVKVTFFGSLLAIACALIAALARLSPVAPLRWLAITYIEVFRGSSL
LVQLFWLYFVLPMPPFNIEMSAFAVAVVGLGLNIGAYGAEVLRGAIRSVHRGQHEACQAL
NMTPLTRMRRIILPQALLAAIPPGTNLLIELLKNTSLVSLITLSDLAFRARQLDQATLMT
MEIFGLALVIYFVLAQTINFGMRQLERRLARGRMRGGLS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory