PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF182 FitnessBrowser__psRCH2:GFF182 (958 amino acids)

SeqID: GFF182 FitnessBrowser__psRCH2:GFF182
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600406: glycine cleavage system protein P1[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF182 FitnessBrowser__psRCH2:GFF182
MPYMPSLSQLQQPDAFLRRHLGPDQAEQQAMLDALGLTSREQLIEQTVPPAIRLQDELDL
PAALDEQAALAKLRGYAEQNQLWTSLIGMGYHGTITPPVILRNVLENPGWYTAYTPYQPE
IAQGRLEALLNYQQMIIDLTGLDLANASLLDEATAAAEAMTLARRMAKSKSNRFFVDENC
HPQTLSVVQTRAEAFGFELVVGTLDELAGQEVFGALLQYPDTHGEIRDLRPAIEQLHAQQ
ALACVAADLLSLLLLTPPGELGADVVLGSTQRFGVPMGYGGPHAAYFASRDEFKRGMPGR
IIGVSKDARGNTALRMALQTREQHIRREKANSNICTAQVLLANIAGFYAVYHGPQGLKRI
AQRVHRLTAILAAGLEQKGIVRLNQHFFDTLTLEVGGAQTAIIESAEAAQINLRILGRGR
LGVSLDETCDERTVEQLLAIFLGADHGLDVAALDAGELAAGIPAGLQRESGYLEHPVFNS
HHSETEMLRYLKQLENKDLALNQAMIPLGSCTMKLNATSEMIPITWAEFANLHPFVPRVQ
AQGYKLMIEELEAWLCAITGFDAISMQPNSGAQGEYAGLVAIRKYHESRGEGQRDICLIP
SSAHGTNPASAQMVSMRVVIVECDKGGNVDLEDLKRKAAEAGDRLSCLMITYPSTHGVYE
ENVREICAAIHAHGGQVYMDGANLNAQVGLARPADIGADVSHMNLHKTFCIPHGGGGPGM
GPIGVKAHLAPFVANHPVVELEGPQPGNGAVSAAPWGSASILPISWMYIAMMGPQLRDAT
EVAILGANYLANRLGDAFPVLYAGRNGRVAHECILDLRPLKAASGISEEDVAKRLMDYGF
HAPTMSFPVPGTLMIEPTESESKAELDRFVEAMLSIRAEIAKVQDGEWPADNNPLVRAPH
TLADVIGEWDRPYSIAEAVTPSAHARAHKYWPAVNRVDNVYGDRNLFCACVPVDAYRD