PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF194 FitnessBrowser__Marino:GFF194 (468 amino acids)

SeqID: GFF194 FitnessBrowser__Marino:GFF194
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 118671: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            4.99
    CytoplasmicMembrane    4.90
    Extracellular          0.10
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF194 FitnessBrowser__Marino:GFF194
MKNDQKLHIAVIGSGGAAMAAALKATERGARVTLIERGTVGGTCVNVGCVPSKIMIRAAH
IAHLRKESPFDAGISAAAPEVDRAKLLQQQLARVEELRDTKYEKILREHKDITVLNGEAR
FLDTNSLLVTLAEGGEKPVHFDRAFIGTGARPAEPPITGLADTPYLTSTSALTLDTGPKR
LIVIGAGFVALELAQAFARLGSKVTVLARSRVLSSEDPAIGEAIAGAFNREGIEVLSQTL
PSNVDYSDNEFIVETPAGTLRADQLLVATGRTPNTEALNLASIGVETSRDAIQVDEHLQT
TVPGIYAAGDCTNQPQFVYVAAAGGSRAAINMTEGEAKLDFSAMPGVMFTDPQVATVGLS
EAEAVARGYSVDTRLLDLENVPRALVNFDTQGFIKMVAERNSGRLLGVQIVAAEGGEIIQ
TAVMALRAGLTVQEIGDDLFPYLTMVEGFKLCAQTFTKDVKQLSCCAG