PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF197 FitnessBrowser__psRCH2:GFF197 (321 amino acids)

SeqID: GFF197 FitnessBrowser__psRCH2:GFF197
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.50
    OuterMembrane          2.50
    Periplasmic            2.50
    Extracellular          2.50
    Cytoplasmic            0.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF197 FitnessBrowser__psRCH2:GFF197
MKGKSLAWIFTAALAGTGLSGVVQAQEKFVTIGTGGQTGVYYVAGQSICRFVNRNAENIK
CNAPASGGGVANVNGLRSGEFNFGIMQSDHQYKAMEGVAPFEKEGKMDDIRAVFSLQSEV
FTVLARRSANIKGLDDLKGKRVNIGNPGSGQRDTLEEIMKVKGWDQSVFSLAAELKPAEQ
ASALGDNNIDAMTYFVGHPNGAIQEATTTTDAVLVPITGPEIDKLLEEKSYYTKAEIPGG
LYKGNDQATQSIGGKAVLSTTSKVDAEVVYQLVKSVFENIERFQRLHPAFKDLKPEEMIE
VGLSAPLHEGAERYYKERGWL