PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF201 FitnessBrowser__Phaeo:GFF201 (286 amino acids)

SeqID: GFF201 FitnessBrowser__Phaeo:GFF201
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600516: acetylglutamate kinase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF201 FitnessBrowser__Phaeo:GFF201
MKKQDMNRDWIATAETLSSALPYLQRYDGAIVVVKLGGHAMGSDEAMETFARDIVLLRQV
GVNPVIVHGGGPMINAMLEKLQIKSDFVNGKRVTDAATMEVVEMVLSGVVNKRIVQAINR
QGGAGVGLSGKDANLITCTQADPDLGFVGTPSQMDPSVLHHLFEQDMIPVIAPIGAGPDG
ETFNINGDTAAGAIASALKADRLLLLTDVSGVKNGAGEVVTELKAADVEAMTRDGVIIGG
MIPKTETALAAVRSGVRACTIVDGRVPNAVLLELFTDHGAGSMIRP