PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2011 FitnessBrowser__psRCH2:GFF2011 (623 amino acids)

SeqID: GFF2011 FitnessBrowser__psRCH2:GFF2011
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [2 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 11140879: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2011 FitnessBrowser__psRCH2:GFF2011
MTTRSNPGSKRPLAIAVHYLALAGSLALAGAAHAKPVSWEDIANDHLSTANVLQYGMGTN
AQRWSPLAQVNESNVFKLTPAWSFSFGDEKQRGQESQAIVHDGVIYVTGSYSRVFALDAK
TGKRLWSYAHRLPDDIRPCCDVVNRGAAIYGDKIYFGTLDARVVALNKDTGKVVWNKKFG
DHAAGYTMTGAPTLVKDGKTGKVLLVHGSSGDEFGIVGKLFARDPETGEEVWMRPFVEGH
MGRLNGKDSTPTGDIKAPSWPDDPNHPTGKKEAWSQGGGAPWQSASFDPETNTIIVGAGN
PAPWNGWERTSDGGNPKDYDSLYTSGQVGVDPSTGEVKWFYQHTPNDAWDFSGNNELVLF
DYKDNNGKTVKATAHADRNGFFYVVDRKDGKLQNAFPFVDGITWASHIDLKTGRPVENQG
QRPPKPEPGEKHGKSVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYKK
GSAYLGQGFRIKRMYDDHVGILRAMNPTTGKIEWEHKEKLPLWAGVLATKGNLIFTGTSD
GYFKAFNAKTGDELWKFQTGSGVISPPVTWEQDGEQYIGVTVGYGGAVPLWGGDMAVLTK
PVAQGGSFWVFKLPEWEKKTAKR