PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2017 FitnessBrowser__psRCH2:GFF2017 (592 amino acids)

SeqID: GFF2017 FitnessBrowser__psRCH2:GFF2017
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 11140879: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2017 FitnessBrowser__psRCH2:GFF2017
MKHTGLRKPFALTALCAAVAMSSLHAWAVTDQEILNDAKSTDQIVTNGMGLQGQRYSTLD
ALNANNINQLRPVWGFSLGGEKQRGQEAQPLIKDGVMYITGSYSRVYAVDARTGKELWQY
DARLPDGIMPCCDVINRGVALYDDLVIFGTLDAKLVALNKDTGKVVWKKTVADYKAGYSL
TAAPLIVKGKLITGVSGGEFGVVGKIEAYNPKNGELLWTRPTVEGHMGYVWKDGKKVESG
ISGGEAGKTWPGDLWKTGGAAPWLGGYYDPDTDSLLFGTGNPAPWNSHLRPGDNLYSSSR
LALDPNDGSIKWHFQTTPHDGWDYDGVNELVSFDYQEGGKTIKAAGTADRNGFFYVLDRT
NGKFIRGFPFVDKITWAKGLDKNGRPIYDDANRPGSPNDAGAQGKTVTVAPSFLGGKNWM
PMAYSQDTGLFYVPSNEWSMDIWNEGTAYKKGAAYLGAGFTIHPLNDDYIGVLRAIDPKT
GKEVWRYKNYAPLWGGVLATKGNLVFTGNPEGYLMAFDAKTGKKLYEFNTGSGVIGSPVT
WEMDGEQYVSVLSGWGGAVPLWGGEVAKRVKEFNQGGMVWTFKLPKDQVAKR