PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2170 FitnessBrowser__WCS417:GFF2170 (308 amino acids)

SeqID: GFF2170 FitnessBrowser__WCS417:GFF2170
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 20141669: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Periplasmic            9.44
    Cytoplasmic            0.33
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
  Final Prediction:
    Periplasmic            9.44

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2170 FitnessBrowser__WCS417:GFF2170
MNRYSLFAATLLLLFSQWSFAAYRIGVSIARVDDNFMTYVRTGLEAAARQQDVQIQFEDA
QGDVVRQLNQVEGFLNQKVDAVIVLPVDTAATANMTRAAVAAKTPLVYVNRHPDERTLPK
GVVTVASNDIEAGQLQMRYLAEKLAGKGNVAIIMGDLAQNATHDRTEGAKQVLKDFPGIK
VVEQQSADWQRSKGMDLTSNWLLAGTQFDAIVANNDEMAIGAAMALQQAGKAKGDVAIVG
IDGLPDGLAAIKRGLLTASVFQDPKAQATQAVQAAVRMIKGEAIEPEVWVPFELIKPEQV
AVFEQRYK