PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2174 FitnessBrowser__psRCH2:GFF2174 (382 amino acids)

SeqID: GFF2174 FitnessBrowser__psRCH2:GFF2174
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 129041: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    Extracellular          0.01
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2174 FitnessBrowser__psRCH2:GFF2174
MIVFKLPSLGADMDEGTLLQWKVKPGERIERGEVIAVVDTAKAAVDVECWHSGEVLELLV
EPGSKIPVGTPLARLLEPGEAREAALAQSPAPVPVAVAAEQPPVTAVAPPADTSRARISP
VARRRAAELGIDPATLSGSGPHGSVTLQDVEAAAAKAAPADRNAAMRQAIAAAMSRSKRE
IPHYYLSETVAFGAAARWLQAYNAERIPEERLLVSVLLLKAVALALRDYPQLNGYWRDGA
FQPGEGIHLGTAISLRQGGLIAPALHDVAGQPLPQLMQALGDLVQRARAGSLRSSELSDA
TLTVTQLGEQGVDSVFGVIYPPQVALVGVGRIVERPWVEAGALCVMPSVVLSLAADHRAS
DGHYGARFLAEVRRLLQNPEQL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory