PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2204 FitnessBrowser__Marino:GFF2204 (580 amino acids)

SeqID: GFF2204 FitnessBrowser__Marino:GFF2204
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.50
    OuterMembrane          2.50
    Periplasmic            2.50
    Extracellular          2.50
    Cytoplasmic            0.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2204 FitnessBrowser__Marino:GFF2204
MFNNNKYPRTLLLSAAVGVASLGLSLHVSADQYSEAAEKWVNEAFKNSTLSKEEQLKEME
WFTKAAEQFRGMDINVVSETIATHEYESNVLAKAFSEITGINLTHTLIQEGDVIEKLQTQ
MQSGRNIYDGYVNDSDLIGTHFRYGKVVAVEDIMNGAGKDLTLPTLDLDDFIGLDFTTGP
DGKLYQLPSQQFANLYWFRADWFEREDLQKQFKDIYGYDLGVPVNWSAYEDIAEFFSVHV
KEIDGERVYGHMDYGKKDPSLGWRFTDAWFSMAGAGDKGLPNGLPVDEWGIRVEECHPVG
SSVSRGGATNGPAAVYATEKYVDWLREYAPPEAQGMTFSEAGPVPAQGNVAQQIFWYTAF
TASMIKDGLPVVNEDGTPKWRMAPSPRGPYWEEGMKLGYQDVGSWTFLDSTPEKRRLAAW
LYAQFTVSKTVSLEKTIAGLTPIRESDIESEAMTEMAPKLGGLVEFYRSPARVQWSPTGT
NVPDYPKLAQLWWQYIAQAASGEATPQEALDGLAQAQDRVMERLERANVQPTCGPKLNEP
RDPQYWLDQPGAPKPKLANEKPQGKTVAYDELLKTWEEAR