PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2295 FitnessBrowser__Phaeo:GFF2295 (344 amino acids)

SeqID: GFF2295 FitnessBrowser__Phaeo:GFF2295
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 20141694: Glycine betaine/L-proline transport ATP-binding protein proV]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2295 FitnessBrowser__Phaeo:GFF2295
MTPKTKLSCRNIWKLYGANAEAFLNANPTPSGEDIRKAGIIGAVRDARIDIAEGEIFIIM
GLSGSGKSTLVRCLSRLIEPTGGQVLFDGVDLLTASEQELIEIRRHKMGMVFQHFALLPH
LTVLQNVMFPLTVQAVPKSEAEVKAREVVELVGLKGREDYYPRELSGGQQQRVGIARSLV
TEPDLWFLDEPFSALDPLIRREMQDEFLRLQARLHKTIVFITHDFEEAVRLADRIAIMKD
GHIIQIATPEELVLNPATDYVAEFTRHIPRSKVLTVGGIMASGTDGEGTPVPQTARVSDV
AEQIIAADAPRPVCDDSGRIIGSINRQAVARVLFGAGETSGGIE