PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2298 FitnessBrowser__Phaeo:GFF2298 (815 amino acids)

SeqID: GFF2298 FitnessBrowser__Phaeo:GFF2298
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 7388257: Sarcosine oxidase subunit alpha]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2298 FitnessBrowser__Phaeo:GFF2298
MTELPSTAKAVIIGGGIIGCSTAYHLAKLGWTDTVLLERKKLTSGTTFHAAGLVGQLRSN
ANITQLLGYSVDLYNKIETETGLGTGWKMNGGLRLACNEERWTEVKRQATTAHSFGLEME
LLTPKEAQDLWPLMDISDVIGAAFMPTDGQANPSDITQALAKGARMAGAKIFEDTKVIDI
EIEDGRIRAVITEHGRIECEKVICCAGQWTRTFAKRFGVNVPLVPMEHQYMVTEPFEGVP
SNLPTLRDPDRLTYYKEEVGGLVMGGYEPNPIPWATDGIPKGFHYSLLDSNFDHFEQLME
QALGRVPALEHAGIKTLTNGPESFTPDGNFIIGEAPELSNFYVGAGFNAFGIAAGGGAGM
ALAEWVKNGEPPFDLWSADIRRFGRPHFDTDWIRTRTVEAYGKHYTMAWPHEEHDSGRPC
RKSPLYDTLKNKGACFGEKLGWERPNWFADATRGETPQDLYSFGRQNWFDAVGREHKAAR
EAAVLFDQTSFAKFTLKGPDALAAMNWICANDVDKPVGSLIYTQMLNDKGGIECDLTVGR
VAQDEFYIVTGTGYVTHDFDWIRRNIPEGMNCQLFDITSSNAVLSLMGPKARDILAAVTR
DDVSNDGFQFGTIRTIGIAGCPVQALRVTYVGELGWELHLPVEYAQTVYAALMGVGQPLG
LVDAGYRAIESLRLEKGYRAWGSDIGPDHTPFEAGLGWAVKLRKKIAFKGRAAAEARKAG
GVKKMLACFTTDPGVVLMGRETIYRNGKRVGWLTSGGYGYTVGQSIGYGYIRNPDGVDPD
YVLSGDYELEVATQRVPCNVQLGPLYDPSMSRVKV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory