PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2304 FitnessBrowser__Phaeo:GFF2304 (381 amino acids)

SeqID: GFF2304 FitnessBrowser__Phaeo:GFF2304
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 462590: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    Extracellular          0.01
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2304 FitnessBrowser__Phaeo:GFF2304
MTLVGNWSYPTAIKFGAGRIRELAEACATAGMKKPLLVTDKGLADLPVTQSTLDILEAAG
LGRAMFCEVDPNPNEKNLEAGVAAYKAGDHDGVIAFGGGSGLDLGKMVAFMCGQNRPVWD
FEDIGDWWTRADADAIAPIIAVPTTAGTGSEVGRASVITDSVTHQKKIIFHPKVLPTVVI
CDPELTVGMPKFITAGTGLDAFAHCVEAFSSPHYHPMSQGIALEGMRLVKEYLPRAYADG
TDIEARAQMMSAAAMGATAFQKGLGAIHAMSHPIGALFNTHHGTTNAVCMLAVLAFNAPE
IADRFKTAADYLGIDGGFEGVCAYVQELNDSLGIPRGLSELGVTEAAIPELVKGALIDPS
CGGNPVVLDQANLTQLFMNTL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory